Structure of PDB 6ywe Chain 1 Binding Site BS01

Receptor Information
>6ywe Chain 1 (length=367) Species: 5141 (Neurospora crassa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GGPELGSRRRRAALATTGNLPFEQLPYQCFQDARKILQQDRAAKIAQIVK
ETEKIKLIEARDASEFEGGEAAKQTRIKSLRKYIEELKILADINDPEVKR
RFEDGRGDMTKPVYRFMAERRWRSMDYKIIAQRISQFHVVPDLLPAFDPT
MDVKLSFRGYQVSPGAILDSRVTEVAPTLRMQVFDKGERLLTVVVIDSDV
PDVTHDNFKRRCHFLAANIPWDPSKTVLSLRSVGDRVEGDVGKPWLPPFA
QKGSPYHRLNVFVLEQKPGAKIDGEALKKHLENRENFSLKGFREKFDLEP
VGFNLFRSEWDEGTAEVMERHGIPGAEVEFKRQKFASLKPPRKARGWEAK
RQKPKYKSLWKYVKRIA
Ligand information
>6ywe Chain A (length=2837) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guaauggauauaaagcuuauguuuauauauauauauaaguauauaaagag
acuacuaccaauagcuacacuauguauuaaggagaguauaacuuaauuua
uguuuaugauagagguuaucaacauaugaacucuuagagaaauuacuuaa
uaaacgaagugaauugaaauaucuuauuaacuucaggaaaagaaaucaaa
cgagauucuaugauuagugugaacgaaaauagagcagccuauuaaaauaa
guaaaauggcuuuaaagcuguuugaauauuguggggaaccuuccucaaag
gcuaaauauaauacaugaguuacagagaaaaguaccgugagggaaagcuu
ugaaauaguaguuuuauaagcagcucaagcaauaagaaagcgagagcgua
ccuuuugcauaaugggucaccaaguuaauuuuagaugcgagcgaauuaga
ugugcauaguuaaaccgaucauuaaaauaaugaauagugucuaaaguuag
acccgaagccuggugaucuuacuauagucaggacuauaaagguccgaacg
gguuaucguugcaaagauauccgaagaacuaugguaagcgagugaaagac
aacacugacuaggauagcugguuuucugcgaaaccuauaauaguaggcaa
uuuaaguaacaucuuaguagguacagaacuuaaucucagacaagauguag
auuuucauaccuagguaugaaaugcauuuuuuuuuguauacaucggggga
ucgugaagauuuuaucggugaguauguagacucggaaugacaaagaugaa
ucuugaauaaucagacauagaaugauaagguuguaugucaaaagggaaac
agcccagaacaagaguuaagguuccaaaauuauuauuaagugaaauaaag
aaaguuuuuauauaagucgacaagaagaugggcuuggaagcagccauaau
uuaaagaucucguaacagagcacuuguuaaaucuuaaaagcaucgaaaau
uuaacggaucuaaauaauauaccgaaaccuuguccauauguaacauuagu
aauaauauuaauguuauuugaugggguagcagaacguugagugaaucuua
gauuuuuuuuuuauaacuaaauauagaugauaacucaagugagaauggug
acaugaguaacaaaaaagaguuuaagguaccuaaaagguaucuuagaguc
ucgccuaaagcuuauggcuacgucaaguaacggccucuaaguuuauaauc
ugaagauuaugacgaugagaaaacuuugguaccaacauuuaaaagugaaa
auugugcaggaaggauaaaccguaccuagaaucugaaacaaguaagcuag
uagagaauacgaaggcgugaaugagauaacaaucauaaaggaacucggca
aacuaacuaccguaacuuagggauaaggagagcucauuagucucgaacga
guaaaaaggaagaagcauggaauauuguuguacgacuguuuaauuaaaac
aaagcacuuugcaaaaagacgauaagucuaaguauugagugugauuucug
cccgaugccggcugguuaacgaauuuucuaaauugaaaaaaaauuugguu
ucagaggaacccccgguuaauggcggccuuagcgugaggguccuaaggua
gcgaaaugccuuggccguuaaaugcggucuugcaugaaugauguaacgau
acaacagcugucucuaugauugacucagugaaauuggaauaacugugcag
auacaguuuaccucuaguuagacgagaagacccuaugcagcuuuacuguu
acuaauuauugaauacgauucugaaaauuuccaguguaaaagguaaucga
uaagauauaauugaaacaccuuuauuuuucuaucguauuauuaaaccuua
aauuaaggaacaauuguuagaagacaguuuaugcggggcacaggccccau
aaagaguaaaugggugugucuaaaauguuugcaauuuuuuauaguauaua
ucaaaucaucuuuaugcuauucauagaccuuggguacaguauaaaaauua
uauauguauuaauuuacauauauuuuuucuaagaaauuagguaagauuuu
guuuauagagaaauuagauguaaaaaaaaaaucuuaugagggcggauccg
cuucuaauauuuuuuuguaguuauuauuauaauaauaaucauguuuauua
cuuaaaaagcuuaauggcuuaaucuugccuuacuguuugauuaacaacaa
aucuuacagucgcguaagcggggcauaggaucacaagauacaaaaaggaa
agaucuuggauuuuuggaaaagcuacgcuagggauaacaggcuaauuugc
gcaagaguguacaaaaugagugcgcgguuuggcaccucggcuugacuaau
ccucauggaugcagaaacuauguaggguacgacuguucgucgauuaaaaa
guuacaugagcuggguuaaauacgucgugagacaguaugguuucuaucuu
cuagagggaauuagaauauaauaaggauuaaccuuuguacgaaaggaaca
ugggguacuauuguuaacaguuuuauuaaccucugguuuaccuguuguuu
augugccuuagggauguuaccgucacuugaguaaauacaauagcauaagc
auggcaggaaagcuaaguuagucaaaaauaagugcugaaagcauauaggc
acgaaauuuaccuuaagauauuucuuaaauauacguaagaaaauauuacg
uuaauaggcuuaguuuguaauaaucuagagauuuuaaggaacuaaguacu
aauuuuauaaaaaacugaaugauuaauauaucuuaca
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....>>>>....>>.>>>>>...>>>>>...<<.......>>.<<<<<<.
..........>>>>.>>..<<.....<.......<<<..<<<<...>>>>
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<<<<<<<<......>>>>>>>>>................<<<<<<<....
.<<<<.........>>>>.<<<<..<<<<.<<.<<<.<<.<<<<<..>>>
>>>>>>>.>>..>>>>...<<<<<<<<<..>>>>>>>>>........>>>
>......<<<.[.(((>>>...>>>>>>>...<<<<..<<<.........
>>>..>>>>.<<<....>>>.>>)))]......<<<<<<.<...]]]]..
.>>>>>>>............>>>>..>>>>>>.......<<<<.<...<<
<<<...<<.......>>...>>>>>....>>>>.>..<<<<.<<<<<...
<<<<<<<<.........>>>>>..>>>..<<<<.....>>>>.......>
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<<<<.<<<..>>>...<<<<...)))))..>>>>........>>>>>>>>
>..>>>>>...>>>>.>>>>>>..<<<.<..<<<<<...........>>>
>>...>>>>.>>>>>...>>>.>>>....<<<.<<<<<.......>>>>>
....<<<<<<<<<<<<.....<<<<<..>>>>>....>>>.>>>>>>.>>
>.....>>>....>>>>>>>>.....>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ywe Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.
Resolution2.99 Å
Binding residue
(original residue number in PDB)		L87 G88 S89 R90 R91 R92 A95 L96 T99 G100 L102 L107 K126 E133 K136 R143 R158 S161 Y165 L172 N176 R182 E185 D186 Q214 R215 Q218 F219 G241 R262 H287 N289 F290 R292 Y338 N365 R366 E367 S370 R389 K413 R414 K416 S419 K421 P422 R424 K425 R427 G428 W429 K432 R433 K435 P436 K437 K439 K443 Y444 R447
Binding residue
(residue number reindexed from 1)		L5 G6 S7 R8 R9 R10 A13 L14 T17 G18 L20 L25 K44 E51 K54 R61 R76 S79 Y83 L90 N94 R100 E103 D104 Q132 R133 Q136 F137 G159 R180 H205 N207 F208 R210 Y256 N283 R284 E285 S288 R307 K331 R332 K334 S337 K339 P340 R342 K343 R345 G346 W347 K350 R351 K353 P354 K355 K357 K361 Y362 R365
External links