Structure of PDB 1qjy Chain 1 Binding Site BS01

Receptor Information
>1qjy Chain 1 (length=285) Species: 31708 (rhinovirus A16) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NPVERYVDEVLNEVLVVPNINQSHPTTSNAAPVLDAAETGHTNKIQPEDT
IETRYVQSSQTLDEMSVESFLGRSGCIHESVLDIVDNYNDQSFTKWNINL
QEMAQIRRKFEMFTYARFDSEITMVPSVAAKDGHIGHIVMQYMYVPPGAP
IPTTRDDYAWQSGTNASVFWQHGQPFPRFSLPFLSIASAYYMFYDGYDGD
TYKSRYGTVVTNDMGTLCSRIVTSEQLHKVKVVTRIYHKAKHTKAWCPRP
PRAVQYSHTHTTNYKLSSEVHNDVAIRPRTNLTTV
Ligand information
>1qjy Chain 4 (length=29) Species: 31708 (rhinovirus A16) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GAQVSRQSLNYFNINYFKDAASSGASRLD
Receptor-Ligand Complex Structure
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PDB1qjy Analysis of Three Structurally Related Antiviral Compounds in Complex with Human Rhinovirus 16
Resolution2.8 Å
Binding residue
(original residue number in PDB)		P2 V3 Y6 E9 D63 S66 E68 K241 H242
Binding residue
(residue number reindexed from 1)		P2 V3 Y6 E9 D63 S66 E68 K241 H242
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.22.28: picornain 3C.
3.4.22.29: picornain 2A.
3.6.1.15: nucleoside-triphosphate phosphatase.
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity

View graph for
Molecular Function
External links
PDB RCSB:1qjy, PDBe:1qjy, PDBj:1qjy
PDBsum1qjy
PubMed10611281
UniProtQ82122|POLG_HRV16 Genome polyprotein

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