Structure of PDB 8iwh Chain 0 Binding Site BS01

Receptor Information
>8iwh Chain 0 (length=165) Species: 35128 (Thalassiosira pseudonana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LVGALPPVGFFDPAGFAAKASPEELARYREVEIMHGRFAQMAVLGFIIPE
KCAYDGAFGDDFLAPTGRALEAINTDPVWLALTLGVISALETLRLLQTEP
GTRTDAKIEGLGWRPKSEAEFVNYQVRELQQGRLAMLAFAGEIAQELVNE
KPLLVNLQDSGFVSW
Ligand information
Ligand IDET4
InChIInChI=1S/C40H54O2/c1-29(17-13-19-31(3)21-23-37-33(5)25-35(41)27-39(37,7)8)15-11-12-16-30(2)18-14-20-32(4)22-24-38-34(6)26-36(42)28-40(38,9)10/h11-21,23,35-36,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,29-15+,30-16+,31-19+,32-20+/t35-,36-/m1/s1
InChIKeyHNYJHQMUSVNWPV-DRCJTWAYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC1=C(C(C[C@@H](C1)O)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C#CC2=C(C[C@H](CC2(C)C)O)C)/C)/C
CACTVS 3.385CC(=CC=CC=C(C)C=CC=C(C)C#CC1=C(C)C[CH](O)CC1(C)C)C=CC=C(C)C=CC2=C(C)C[CH](O)CC2(C)C
CACTVS 3.385CC(=C/C=C/C=C(C)/C=C/C=C(C)/C#CC1=C(C)C[C@@H](O)CC1(C)C)\C=C\C=C(C)\C=C\C2=C(C)C[C@@H](O)CC2(C)C
OpenEye OEToolkits 2.0.7CC1=C(C(CC(C1)O)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C#CC2=C(CC(CC2(C)C)O)C)C)C
FormulaC40 H54 O2
Name(1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol;
Diatoxanthin
ChEMBL
DrugBank
ZINCZINC000095628003
PDB chain8iwh Chain 0 Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8iwh Structure of a diatom photosystem II supercomplex containing a member of Lhcx family and dimeric FCPII
Resolution2.68 Å
Binding residue
(original residue number in PDB)		D46 P47 A48 H69 A76 F80 M170 F173
Binding residue
(residue number reindexed from 1)		D12 P13 A14 H35 A42 F46 M136 F139
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0009765 photosynthesis, light harvesting
Cellular Component
GO:0016020 membrane

View graph for
Biological Process
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Cellular Component
External links
PDB RCSB:8iwh, PDBe:8iwh, PDBj:8iwh
PDBsum8iwh
PubMed37878698
UniProtB5YLU3

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