Structure of PDB 3j3v Chain 0 Binding Site BS01

Receptor Information
>3j3v Chain 0 (length=55) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVPFRRTSKMKKRLRRTHFKLNVPGMTECPSCGEMKLSHRVCKACGSYNG
KDINV
Ligand information
>3j3v Chain A (length=2884) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gguuaaguuagaaagggcgcacgguggaugccuuggcacuaggagccgau
gaaggacgggacgaacaccgauaugcuucggggagcuguaagcaagcuuu
gauccggagauuuccgaauggggaaacccaccacucguaauggaguggua
uccauaucugaauucauaggauaugagaaggcagacccggggaacugaaa
caucuaaguacccggaggaagagaaagcaaaugcgauucccugaguagcg
gcgagcgaaacgggauuagcccaaaccaagaggcuugccucuugggguug
uaggacacucuguacggaguuacaaaggaacgagguagaugaagaggucu
ggaaaggcccgccauaggagguaacagcccuguagucaaaacuucguucu
cuccugaguggauccugaguacggcggaacacgugaaauuccgucggaau
ccgggaggaccaucucccaaggcuaaauacucccuagugaccgauaguga
accaguaccgugagggaaaggugaaaagcaccccggaaggggagugaaag
agauccugaaaccgugugccuacaaguagucagagcccguuaacggguga
uggcgugccuuuuguagaaugaaccggcgaguuacgaucccgugcaaggu
uaagcagaagaugcggagccgcagcgaaagcgagucugaauagggcgcau
gaguacguggucguagacccgaaaccaggugaucuacccauguccagggu
gaaguucagguaacacugaauggaggcccgaacccacgcacguugaaaag
ugcggggaugagguguggguaggggugaaaugccaaucgaaccuggagau
agcugguucucuccgaaauagcuuuagggcuagccucaagguaagagucu
uggagguagagcacugauuggacuaggggccccuaccggguuaccgaauu
cagucaaacuccgaaugccaaugacuuauccuugggagucagacugcgag
ugauaagauccguagucgaaagggaaacagcccagaccgccagcuaaggu
cccaaaguauacguuaaguggaaaaggauguggaguugcuuagacaacca
ggauguuggcuuagaagcagccaccauuuaaagagugcguaauagcucac
uggucgagugacucugcgccgaaaauguaccggggcuaaacguaucaccg
aagcugcggacuguucuucgaacagugguaggagagcguucuaagggcug
ugaagccagaccggaaggacugguggagcgcuuagaagugagaaugccgg
uaugaguagcgaaagaggggugagaauccccuccaccgaaugccuaaggu
uuccugaggaaggcucguccgcucaggguuagucgggaccuaagccgagg
ccgaaaggcguaggcgauggacaacagguugauauuccuguaccaccucc
ucaccauuugagcaauggggggacgcaggaggauaggguaagcgcgguau
uggauauccgcguccaagcaguuaggcugggaaauaggcaaauccguuuc
ccauaaggcugagcugugauggcgagcgaaauauaguagcgaaguuccug
auuccacacugccaagaaaagccucuagcgaggugagaggugcccguacc
gcaaaccgacacagguaggcgaggagagaauccuaaggugaucgagagaa
cucucguuaaggaacucggcaaaaugaccccguaacuucgggagaagggg
ugcucuguuagggugcaagcccgagagagccgcagugaauaggcccaggc
gacuguuuagcaaaaacacaggucucugcgaagccguaaggcgaaguaua
ggggcugacgccugcccggugcuggaaccccaguaaacggcggccguaac
uauaacgguccuaagguagcgaaauuccuugucggguaaguuccgacccg
cacgaaaggcgcaacgaucugggcacugucucaacgagagacucggugaa
auuauaguaccugugaagaugcagguuacccgcgacaggacggaaagacc
ccguggagcuuuacugcagccugauauugaauguugguacagcuuguaca
ggauagguaggagccuuggaaaccggagcgccagcuucgguggaggcauc
ggugggauacuacccuggcuguauugaccuucuaacccgccgcccuuauc
gggcggggagacagugucaggugggcaguuugacuggggcggucgccucc
uaaaagguaacggaggcgcccaaagguucccucagaaugguuggaaauca
uucgcagaguguaaaggcacaagggagcuugacugcgagaccuacaaguc
gagcagggacgaaagucgggcuuagugauccggugguuccgcauggaagg
gccaucgcucaacggauaaaagcuaccccggggauaacaggcuuaucucc
cccaagaguccacaucgacggggagguuuggcaccucgaugucggcucau
cgcauccuggggcuguagucagucccaaggguugggcuguucgcccauua
aagcgguacgcgagcuggguucagaacgucgugagacaguucggucccua
uccgucgcgggcgcaggaaauuugagaggagcuguccuuaguacgagagg
accgggauggacgcaccgcugguguaccaguuguucugccaagggcaucg
cuggguagcuaugugcggacgggauaagugcugaaagcaucuaagcauga
agccccccucaagaugagauuucccauuccgcaaggaaguaagaucccug
aaagaugaucagguugauaggucugagguggaaguguggcgacacaugga
gcugacagauacuaaucgaucgaggacuuaacca
<<<<<<<<......<<<<<<<<<<<.....<<.<<<<<<<.<<<<<<...
...<<<<<<.....((.>>>.....<<<<<<<..<<<)).....>>>...
..>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.
<<<<<<<<<.........>>>>>>>.>>.>>....<<<<<<.....<...
...>......>>>>>.>.........<<....>>...<<<<......<<.
....>>.....>>>>...<<<....<<<<<<<<....>>>>>>>>.....
.<<<.<<<<....................<..<<<<.<<<.....<<<..
......>>>.........<<<.......>>>...>>>...>>>>...>..
......>>>>...>>>.....<<<<<<<<.........>>>>>>>>....
..<<<<<..((((>>>>>..>>>......>>.>>.>>>>.>>>.......
.......<<....>>....>>.........<<<<....>>>>........
..........>>>>>>>>>>>..<....<<<<..<<<<......>>>>..
>>>>...<............>.<<<<<<....<<<<<<<.<<<<...<<<
...<<<.....>>>...>>>...<<....>>..<<<<.....>>>>....
...>>>>.>>>>>>>..<<.<...<<<<<<....<<<<<<<<<<..<<<.
...<<<<<<......>>>>>>.....>>>...<<<.<<<<<........>
>>>>>>>....>>>>>>>>>>..<<<.....>>>......>>>>>>....
..>.>>..<<<<<<....<<<<<....>>>>><<<<<<<<<......<.<
<<<.<...<<<...<<<<<<<<...<<.<<<.......>>>..>>...>>
>>>>>>..>>.>...>.>>>>.>......>>>>>>>.>>..<<<<<<<.<
<......>>.>>>>>>>....<<<......>>>....<<<.<<<...<<<
(((.....<<<<<<...........<<..<<<<<<<<<...........<
.......<<...........>>..............<<......>>....
>.......>>>>>>>>>.>>...........))).....>>>>>>.>>>.
..>>>>>>..<<<<<<...>>>>>>.....>>>>>><.<<<<<<<.<<..
....<<<<<..........>>>>>...>>.>>>>>>>..>.....>>>>>
><......<.....<<<<<<.......>>>>>><<<<....<<<<<.<<<
..<<<<<<...<<.....>>.>>>>>>....((<<<<.<<...<<<...<
<<....>>>...>>>...>>....<<<<........>>>>.))<<<<..<
<<<<<...........<<<<....<<<<..<<<..<<<....<<<<<..[
[[.....>>>>>.<<<.........<.<<<<<<<<.<<.....>>>>>>>
>>.....>.>.........>>>........................>>>.
..>>>...>>>>.........>>>>......>>>>>>.>>>>>>>>.>>>
.....<<......>>>>>>>.<<<<.....>>>>..>>>>..<<<<....
<<<<<<<<.<<...............<<<<<...............>>>>
><<<<<.<<..<<<....>>>.>>.>>>>>............<<<<<<<<
<..<<...........>>..<<<<<<<.....<<<....>>>.......>
>>>>>>..<<<<.<<<..<<<<<<<....>>>>>..>>>>>.<<<<<...
....>>>>>.........<...........<<<<<.......>>>>>...
..>....>>>>...>>.>>>>>>>.....>>.>>>>>>>>.>>>>.>...
..>.(...<<<<<.......)>>>>>>.<<<<<<<<.<<<.........<
<<<.<<<<<<..<<<<<.<<<<<<<<<.<<<.<<<<<<<<<<........
.....<.<<...<<.......<<<<<<<<....>>>>>>>>....>>...
..........>>>.....>>>>>>>>>>.>>>.......<<<<<<.....
>>>>>>.......>>>>>>>>>..>>>>>..<<<<.....>>>><<<<<<
...........>>>>>>..<<...<<<<<<<...<<<<<<.......>>>
>>>.....<<...(((>>....>>>>>>>...<<<<..<<<......>>>
..>>>>.<<<....>>>.>>))).......<<<<<<.<<<..))))..>>
>>>>>>>.............>>>>..>>>>>>.......<<<<...<<<<
<<...<<.......>>...>>>>>>....>>>.>.........<<<..<<
<<<..<<<<<<<<<......>>>>>>>..>>.<<<<<.....>>>>>...
..>>>>>......>>>.......<<<<<<<....>>>.>>>>........
>>>>>>>>>>>....<<<<<<<...<<<<..<<<<<<<............
...>>>>>>>.<<<<<....<<<...<<<<.<<<<<...]]]>>>>>...
>>>>...>>>..>>>>>...<<<.<..<<<<<...........>>>>>..
.>>>>.>>>>.......>>>>>>>....<......>......<<<<<<<<
<.......>>>>>....<<<<<<<..<<<....<<<<<....>>>>>...
>>>...>>>>.>>>...>>>>....>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3j3v Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit
Resolution13.3 Å
Binding residue
(original residue number in PDB)
A2 V3 P4 F5 R6 R7 T8 S9 K10 M11 K12 K13 R14 L15 R16 R17 H19 F20 K21 L22 N23 P25 T28 E29 K37 S39 H40 R41 S48 Y49 N50
Binding residue
(residue number reindexed from 1)
A1 V2 P3 F4 R5 R6 T7 S8 K9 M10 K11 K12 R13 L14 R15 R16 H18 F19 K20 L21 N22 P24 T27 E28 K36 S38 H39 R40 S47 Y48 N49
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

View graph for
Cellular Component
External links
PDB RCSB:3j3v, PDBe:3j3v, PDBj:3j3v
PDBsum3j3v
PubMed23700310
UniProtO34687|RL32_BACSU Large ribosomal subunit protein bL32 (Gene Name=rpmF)

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